Browse entries in the PDBbind-CN Database

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Related entries of code: 8gpb
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1a8iRCSB PDB    PDBbind842aa, >1A8I_1|Chain... at 99%
1axrRCSB PDB    PDBbind842aa, >1AXR_1|Chain... at 100%
1b4dRCSB PDB    PDBbind842aa, >1B4D_1|Chain... at 99%
1c50RCSB PDB    PDBbind830aa, >1C50_1|Chain... at 99%
1c8kRCSB PDB    PDBbind842aa, >1C8K_1|Chain... at 99%
1c8lRCSB PDB    PDBbind842aa, >1C8L_1|Chain... at 100%
1e1yRCSB PDB    PDBbind842aa, >1E1Y_1|Chain... at 100%
1gfzRCSB PDB    PDBbind842aa, >1GFZ_1|Chain... at 99%
1ggnRCSB PDB    PDBbind842aa, >1GGN_1|Chain... at 99%
1gpyRCSB PDB    PDBbind842aa, >1GPY_1|Chain... at 100%
1h5uRCSB PDB    PDBbind842aa, >1H5U_1|Chain... at 99%
1hlfRCSB PDB    PDBbind842aa, >1HLF_1|Chain... at 99%
1k06RCSB PDB    PDBbind842aa, >1K06_1|Chain... at 99%
1k08RCSB PDB    PDBbind842aa, >1K08_1|Chain... at 99%
1ktiRCSB PDB    PDBbind842aa, >1KTI_1|Chain... at 99%
1noiRCSB PDB    PDBbind842aa, >1NOI_1|Chains... at 99%
1nojRCSB PDB    PDBbind842aa, >1NOJ_1|Chain... at 99%
1nokRCSB PDB    PDBbind842aa, >1NOK_1|Chain... at 99%
1p2gRCSB PDB    PDBbind842aa, >1P2G_1|Chain... at 99%
1pygRCSB PDB    PDBbind842aa, >1PYG_1|Chains... at 100%
1z6pRCSB PDB    PDBbind842aa, >1Z6P_1|Chain... at 99%
1z6qRCSB PDB    PDBbind842aa, >1Z6Q_1|Chain... at 99%
2amvRCSB PDB    PDBbind842aa, >2AMV_1|Chain... at 100%
2g9qRCSB PDB    PDBbind842aa, >2G9Q_1|Chain... at 100%
2g9rRCSB PDB    PDBbind842aa, >2G9R_1|Chain... at 100%
2g9uRCSB PDB    PDBbind842aa, >2G9U_1|Chain... at 100%
2g9vRCSB PDB    PDBbind842aa, >2G9V_1|Chain... at 100%
2gj4RCSB PDB    PDBbind824aa, >2GJ4_1|Chain... at 100%
2gm9RCSB PDB    PDBbind825aa, >2GM9_1|Chain... at 100%
2offRCSB PDB    PDBbind842aa, >2OFF_1|Chain... at 100%
2priRCSB PDB    PDBbind842aa, >2PRI_1|Chain... at 99%
2prjRCSB PDB    PDBbind842aa, >2PRJ_1|Chain... at 99%
2pyiRCSB PDB    PDBbind843aa, >2PYI_1|Chain... *
2qlmRCSB PDB    PDBbind842aa, >2QLM_1|Chain... at 100%
2qlnRCSB PDB    PDBbind842aa, >2QLN_1|Chain... at 100%
2qn1RCSB PDB    PDBbind842aa, >2QN1_1|Chain... at 100%
2qn2RCSB PDB    PDBbind842aa, >2QN2_1|Chain... at 100%
2qn3RCSB PDB    PDBbind842aa, >2QN3_1|Chain... at 100%
2qnbRCSB PDB    PDBbind842aa, >2QNB_1|Chain... at 100%
2qrgRCSB PDB    PDBbind842aa, >2QRG_1|Chain... at 100%
2qrhRCSB PDB    PDBbind842aa, >2QRH_1|Chain... at 100%
2qrmRCSB PDB    PDBbind842aa, >2QRM_1|Chain... at 100%
2qrpRCSB PDB    PDBbind842aa, >2QRP_1|Chain... at 100%
2qrqRCSB PDB    PDBbind842aa, >2QRQ_1|Chain... at 100%
3amvRCSB PDB    PDBbind842aa, >3AMV_1|Chain... at 100%
3bcsRCSB PDB    PDBbind842aa, >3BCS_1|Chain... at 100%
3eboRCSB PDB    PDBbind842aa, >3EBO_1|Chain... at 100%
3ebpRCSB PDB    PDBbind842aa, >3EBP_1|Chain... at 100%
3g2hRCSB PDB    PDBbind842aa, >3G2H_1|Chain... at 100%
3g2iRCSB PDB    PDBbind842aa, >3G2I_1|Chain... at 100%
3g2jRCSB PDB    PDBbind842aa, >3G2J_1|Chain... at 100%
3g2kRCSB PDB    PDBbind842aa, >3G2K_1|Chain... at 100%
3g2lRCSB PDB    PDBbind842aa, >3G2L_1|Chain... at 100%
3g2nRCSB PDB    PDBbind842aa, >3G2N_1|Chain... at 100%
3l79RCSB PDB    PDBbind843aa, >3L79_1|Chain... at 100%
3l7aRCSB PDB    PDBbind843aa, >3L7A_1|Chain... at 100%
3l7bRCSB PDB    PDBbind843aa, >3L7B_1|Chain... at 100%
3l7cRCSB PDB    PDBbind843aa, >3L7C_1|Chain... at 100%
3l7dRCSB PDB    PDBbind843aa, >3L7D_1|Chain... at 100%
3mqfRCSB PDB    PDBbind842aa, >3MQF_1|Chain... at 100%
3mrtRCSB PDB    PDBbind842aa, >3MRT_1|Chain... at 100%
3mrvRCSB PDB    PDBbind842aa, >3MRV_1|Chain... at 100%
3mrxRCSB PDB    PDBbind842aa, >3MRX_1|Chain... at 100%
3ms2RCSB PDB    PDBbind842aa, >3MS2_1|Chain... at 100%
3ms4RCSB PDB    PDBbind842aa, >3MS4_1|Chain... at 100%
3ms7RCSB PDB    PDBbind842aa, >3MS7_1|Chain... at 100%
3mscRCSB PDB    PDBbind842aa, >3MSC_1|Chain... at 100%
3mt7RCSB PDB    PDBbind842aa, >3MT7_1|Chain... at 100%
3mt8RCSB PDB    PDBbind842aa, >3MT8_1|Chain... at 100%
3mt9RCSB PDB    PDBbind842aa, >3MT9_1|Chain... at 100%
3mtaRCSB PDB    PDBbind842aa, >3MTA_1|Chain... at 100%
3mtbRCSB PDB    PDBbind842aa, >3MTB_1|Chain... at 100%
3mtdRCSB PDB    PDBbind842aa, >3MTD_1|Chain... at 100%
3nc4RCSB PDB    PDBbind841aa, >3NC4_1|Chain... at 100%
3np7RCSB PDB    PDBbind842aa, >3NP7_1|Chain... at 100%
3np9RCSB PDB    PDBbind842aa, >3NP9_1|Chain... at 100%
3npaRCSB PDB    PDBbind842aa, >3NPA_1|Chain... at 100%
3s0jRCSB PDB    PDBbind842aa, >3S0J_1|Chain... at 100%
3symRCSB PDB    PDBbind842aa, >3SYM_1|Chain... at 100%
3syrRCSB PDB    PDBbind842aa, >3SYR_1|Chain... at 100%
3t3dRCSB PDB    PDBbind842aa, >3T3D_1|Chain... at 100%
3t3eRCSB PDB    PDBbind842aa, >3T3E_1|Chain... at 100%
3t3gRCSB PDB    PDBbind842aa, >3T3G_1|Chain... at 100%
3t3hRCSB PDB    PDBbind842aa, >3T3H_1|Chain... at 100%
3t3iRCSB PDB    PDBbind842aa, >3T3I_1|Chain... at 100%
4ej2RCSB PDB    PDBbind825aa, >4EJ2_1|Chain... at 100%
4ekeRCSB PDB    PDBbind825aa, >4EKE_1|Chain... at 100%
4ekyRCSB PDB    PDBbind825aa, >4EKY_1|Chain... at 100%
4el0RCSB PDB    PDBbind825aa, >4EL0_1|Chain... at 100%
4el5RCSB PDB    PDBbind825aa, >4EL5_1|Chain... at 100%
4mhoRCSB PDB    PDBbind825aa, >4MHO_1|Chain... at 100%
4mhsRCSB PDB    PDBbind825aa, >4MHS_1|Chain... at 100%
4mi3RCSB PDB    PDBbind825aa, >4MI3_1|Chain... at 100%
4mi6RCSB PDB    PDBbind825aa, >4MI6_1|Chain... at 100%
4mi9RCSB PDB    PDBbind825aa, >4MI9_1|Chain... at 100%
4micRCSB PDB    PDBbind825aa, >4MIC_1|Chain... at 100%
4mraRCSB PDB    PDBbind825aa, >4MRA_1|Chain... at 100%
6gpbRCSB PDB    PDBbind842aa, >6GPB_1|Chain... at 99%
7gpbRCSB PDB    PDBbind842aa, >7GPB_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1fpiRCSB PDB    PDBbindAMP
1ftaRCSB PDB    PDBbindAMP
1pygRCSB PDB    PDBbindAMP
1ua4RCSB PDB    PDBbindAMP
1z6sRCSB PDB    PDBbindAMP
2gmkRCSB PDB    PDBbindAMP
2gsuRCSB PDB    PDBbindAMP
2q8mRCSB PDB    PDBbindAMP
2qrkRCSB PDB    PDBbindAMP
2vfkRCSB PDB    PDBbindAMP
3tdhRCSB PDB    PDBbindAMP
4cs9RCSB PDB    PDBbindAMP
4g0yRCSB PDB    PDBbindAMP
4lqyRCSB PDB    PDBbindAMP
4ozlRCSB PDB    PDBbindAMP
4qfgRCSB PDB    PDBbindAMP
4wypRCSB PDB    PDBbindAMP
4zmfRCSB PDB    PDBbindAMP
5f74RCSB PDB    PDBbindAMP
5klzRCSB PDB    PDBbindAMP
5o3rRCSB PDB    PDBbindAMP
5ofuRCSB PDB    PDBbindAMP
5yz2RCSB PDB    PDBbindAMP
6fclRCSB PDB    PDBbindAMP
7gpbRCSB PDB    PDBbindAMP
6mmoRCSB PDB    PDBbindAMP
6k4rRCSB PDB    PDBbindAMP
5nx9RCSB PDB    PDBbindAMP
6sy7RCSB PDB    PDBbindAMP
Entry Information
PDB ID8gpb
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Nameglycogen phosphorylase b
Ligand NameAMP
EC.Number E.C.2.4.1.1
Resolution 2.2(Å)
Affinity (Kd/Ki/IC50)Kd=0.25mM
Release Year1992
Protein/NA SequenceCheck fasta file
Primary Reference J.Mol.Biol. v218 pp. 233-60, 1991
Ligand Properties
Formula C10H15N5O7P
Molecular Weight 348.229
Exact Mass 348.071
No. of atoms 38
No. of bonds 40
Polar Surface Area 202.82
LOGP Value -3.71      (Computed with XLOGP3)
-1.72      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 12
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P00489  
Entrez Gene IDNCBI Entrez Gene ID: 100008972  
ASDInformation of known allosteric effects of PDB entries
 
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