Browse entries in the PDBbind-CN Database

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Related entries of code: 6k4r
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1ctrRCSB PDB    PDBbind148aa, >1CTR_1|Chain... at 100%
1k93RCSB PDB    PDBbind144aa, >1K93_2|Chains... at 100%
1lvcRCSB PDB    PDBbind149aa, >1LVC_2|Chains... at 100%
1pk0RCSB PDB    PDBbind147aa, >1PK0_2|Chains... at 100%
1qiwRCSB PDB    PDBbind148aa, >1QIW_1|Chains... at 100%
1s26RCSB PDB    PDBbind148aa, >1S26_2|Chains... at 100%
1xa5RCSB PDB    PDBbind148aa, >1XA5_1|Chain... at 100%
1xfvRCSB PDB    PDBbind149aa, >1XFV_2|Chains... at 99%
1yrtRCSB PDB    PDBbind74aa, >1YRT_2|Chain... at 100%
1yruRCSB PDB    PDBbind74aa, >1YRU_2|Chain... at 100%
2n27RCSB PDB    PDBbind148aa, >2N27_1|Chain... at 100%
2welRCSB PDB    PDBbind150aa, >2WEL_2|Chain... at 99%
3if7RCSB PDB    PDBbind148aa, >3IF7_1|Chain... at 100%
4byfRCSB PDB    PDBbind149aa, >4BYF_2|Chains... at 100%
4dckRCSB PDB    PDBbind149aa, >4DCK_2|Chain... at 100%
4ovnRCSB PDB    PDBbind149aa, >4OVN_1|Chains... at 100%
4r8gRCSB PDB    PDBbind148aa, >4R8G_2|Chains... at 100%
6plmRCSB PDB    PDBbind147aa, >6PLM_2|Chains... at 99%
6o5gRCSB PDB    PDBbind152aa, >6O5G_1|Chain... at 100%
6mudRCSB PDB    PDBbind149aa, >6MUD_1|Chain... at 100%
6mc9RCSB PDB    PDBbind149aa, >6MC9_2|Chain... at 100%
6mbaRCSB PDB    PDBbind149aa, >6MBA_2|Chain... at 100%
6m7hRCSB PDB    PDBbind147aa, >6M7H_1|Chain... at 100%
6k4kRCSB PDB    PDBbind149aa, >6K4K_2|Chains... at 100%
6eebRCSB PDB    PDBbind152aa, >6EEB_1|Chain... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1fpiRCSB PDB    PDBbindAMP
1ftaRCSB PDB    PDBbindAMP
1pygRCSB PDB    PDBbindAMP
1ua4RCSB PDB    PDBbindAMP
1z6sRCSB PDB    PDBbindAMP
2gmkRCSB PDB    PDBbindAMP
2gsuRCSB PDB    PDBbindAMP
2q8mRCSB PDB    PDBbindAMP
2qrkRCSB PDB    PDBbindAMP
2vfkRCSB PDB    PDBbindAMP
3tdhRCSB PDB    PDBbindAMP
4cs9RCSB PDB    PDBbindAMP
4g0yRCSB PDB    PDBbindAMP
4lqyRCSB PDB    PDBbindAMP
4ozlRCSB PDB    PDBbindAMP
4qfgRCSB PDB    PDBbindAMP
4wypRCSB PDB    PDBbindAMP
4zmfRCSB PDB    PDBbindAMP
5f74RCSB PDB    PDBbindAMP
5klzRCSB PDB    PDBbindAMP
5o3rRCSB PDB    PDBbindAMP
5ofuRCSB PDB    PDBbindAMP
5yz2RCSB PDB    PDBbindAMP
6fclRCSB PDB    PDBbindAMP
7gpbRCSB PDB    PDBbindAMP
8gpbRCSB PDB    PDBbindAMP
6mmoRCSB PDB    PDBbindAMP
5nx9RCSB PDB    PDBbindAMP
6sy7RCSB PDB    PDBbindAMP
Entry Information
PDB ID6k4r
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameSidJ
Ligand NameAMP
EC.Number E.C.-.-.-.-
Resolution 3.11(Å)
Affinity (Kd/Ki/IC50)Kd=1.45uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Nature Vol. 572: pp. 387-391
Ligand Properties
Formula C10H15N5O7P
Molecular Weight 348.229
Exact Mass 348.071
No. of atoms 38
No. of bonds 40
Polar Surface Area 202.82
LOGP Value -3.71      (Computed with XLOGP3)
-1.72      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 12
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P0DP23  Q5ZTK6  
Entrez Gene IDNCBI Entrez Gene ID: 801  805  808  57036150  
ASDInformation of known allosteric effects of PDB entries
 
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