Browse entries in the PDBbind-CN Database

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Related entries of code: 2xwd
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2nsxRCSB PDB    PDBbind497aa, >2NSX_1|Chains... at 100%
2v3dRCSB PDB    PDBbind505aa, >2V3D_1|Chains... *
2v3eRCSB PDB    PDBbind505aa, >2V3E_1|Chains... at 100%
2wcgRCSB PDB    PDBbind505aa, >2WCG_1|Chains... at 100%
2xweRCSB PDB    PDBbind505aa, >2XWE_1|Chains... at 100%
3rikRCSB PDB    PDBbind497aa, >3RIK_1|Chains... at 100%
3rilRCSB PDB    PDBbind497aa, >3RIL_1|Chains... at 100%
5lvxRCSB PDB    PDBbind497aa, >5LVX_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2wbgRCSB PDB    PDBbindLGS
Entry Information
PDB ID2xwd
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameGLUCOSYLCERAMIDASE
Ligand NameLGS
EC.Number E.C.3.2.1.45
Resolution 2.66(Å)
Affinity (Kd/Ki/IC50)Ki=0.11uM
Release Year2011
Protein/NA SequenceCheck fasta file
Primary Reference (2011) Org.Biomol.Chem. Vol. 9: pp. 4160
Ligand Properties
Formula C9H16N2O5
Molecular Weight 232.234
Exact Mass 232.106
No. of atoms 32
No. of bonds 33
Polar Surface Area 105.75
LOGP Value -2.15      (Computed with XLOGP3)
-2.58      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P04062  
Entrez Gene IDNCBI Entrez Gene ID: 2629  
ASDInformation of known allosteric effects of PDB entries
 
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