Browse entries in the PDBbind-CN Database

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Related entries of code: 2ybp
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2b2vRCSB PDB    PDBbind16aa, >2B2V_3|Chain... at 93%
2b2wRCSB PDB    PDBbind20aa, >2B2W_3|Chain... at 95%
2co0RCSB PDB    PDBbind15aa, >2CO0_2|Chains... at 100%
2f6jRCSB PDB    PDBbind15aa, >2F6J_2|Chain... at 100%
2fsaRCSB PDB    PDBbind15aa, >2FSA_2|Chain... at 100%
2fuuRCSB PDB    PDBbind15aa, >2FUU_2|Chain... at 100%
2h2gRCSB PDB    PDBbind11aa, >2H2G_2|Chain... at 100%
2h9mRCSB PDB    PDBbind11aa, >2H9M_2|Chains... at 100%
2h9nRCSB PDB    PDBbind11aa, >2H9N_2|Chains... at 100%
2h9pRCSB PDB    PDBbind11aa, >2H9P_2|Chain... at 100%
2l3rRCSB PDB    PDBbind11aa, >2L3R_2|Chain... at 100%
2lbmRCSB PDB    PDBbind15aa, >2LBM_2|Chain... at 100%
2o9kRCSB PDB    PDBbind11aa, >2O9K_2|Chains... at 100%
2r0yRCSB PDB    PDBbind13aa, >2R0Y_2|Chain... at 100%
2rnwRCSB PDB    PDBbind15aa, >2RNW_2|Chain... at 100%
2rnxRCSB PDB    PDBbind13aa, >2RNX_2|Chain... at 92%
2uxnRCSB PDB    PDBbind21aa, >2UXN_3|Chain... at 95%
2v1dRCSB PDB    PDBbind21aa, >2V1D_3|Chain... at 95%
2ybsRCSB PDB    PDBbind12aa, >2YBS_2|Chains... at 91%
3askRCSB PDB    PDBbind13aa, >3ASK_2|Chains... at 100%
3aslRCSB PDB    PDBbind11aa, >3ASL_2|Chain... at 100%
3b95RCSB PDB    PDBbind15aa, >3B95_2|Chain... at 100%
3ij0RCSB PDB    PDBbind11aa, >3IJ0_2|Chain... at 100%
3kv4RCSB PDB    PDBbind24aa, >3KV4_2|Chain... at 95%
3me9RCSB PDB    PDBbind11aa, >3ME9_2|Chains... at 100%
3meaRCSB PDB    PDBbind11aa, >3MEA_2|Chain... at 100%
3metRCSB PDB    PDBbind11aa, >3MET_2|Chains... at 100%
3meuRCSB PDB    PDBbind14aa, >3MEU_2|Chains... at 92%
3ql9RCSB PDB    PDBbind15aa, >3QL9_2|Chain... at 100%
3qlcRCSB PDB    PDBbind15aa, >3QLC_2|Chains... at 100%
3uedRCSB PDB    PDBbind12aa, >3UED_2|Chains... at 100%
3uefRCSB PDB    PDBbind12aa, >3UEF_2|Chains... at 100%
3uigRCSB PDB    PDBbind15aa, >3UIG_2|Chains... at 100%
4a7jRCSB PDB    PDBbind16aa, >4A7J_2|Chain... at 100%
4ft2RCSB PDB    PDBbind15aa, >4FT2_2|Chain... at 100%
4ft4RCSB PDB    PDBbind32aa, >4FT4_2|Chains... at 93%
4gy5RCSB PDB    PDBbind17aa, >4GY5_2|Chains... at 100%
4qq4RCSB PDB    PDBbind16aa, >4QQ4_2|Chains... at 93%
4tmpRCSB PDB    PDBbind11aa, >4TMP_2|Chains... at 100%
4u7tRCSB PDB    PDBbind12aa, >4U7T_3|Chains... at 100%
4w5aRCSB PDB    PDBbind15aa, >4W5A_2|Chains... at 100%
4yhpRCSB PDB    PDBbind16aa, >4YHP_1|Chains... at 100%
4yhzRCSB PDB    PDBbind12aa, >4YHZ_3|Chain... at 100%
5fb0RCSB PDB    PDBbind15aa, >5FB0_2|Chains... at 100%
5fb1RCSB PDB    PDBbind15aa, >5FB1_2|Chain... at 100%
5ix1RCSB PDB    PDBbind15aa, >5IX1_2|Chains... at 100%
5svxRCSB PDB    PDBbind11aa, >5SVX_2|Chain... at 100%
5svyRCSB PDB    PDBbind11aa, >5SVY_2|Chain... at 100%
5x60RCSB PDB    PDBbind20aa, >5X60_3|Chain... at 90%
5znpRCSB PDB    PDBbind15aa, >5ZNP_2|Chains... at 100%
6bhiRCSB PDB    PDBbind16aa, >6BHI_2|Chain... at 100%
6milRCSB PDB    PDBbind19aa, >6MIL_2|Chains... at 94%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2ybkRCSB PDB    PDBbind2HG
2yc0RCSB PDB    PDBbind2HG
Entry Information
PDB ID2ybp
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameLYSINE-SPECIFIC DEMETHYLASE 4A
Ligand Name2HG
EC.Number E.C.1.14.11.-
Resolution 2.02(Å)
Affinity (Kd/Ki/IC50)IC50=24uM
Release Year2011
Protein/NA SequenceCheck fasta file
Primary Reference (2011) Embo Rep. Vol. 12: pp. 463-469
Ligand Properties
Formula C5H8O5
Molecular Weight 148.114
Exact Mass 148.037
No. of atoms 18
No. of bonds 17
Polar Surface Area 94.83
LOGP Value 1.35      (Computed with XLOGP3)
-0.70      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 3
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O75164  Q16695  
Entrez Gene IDNCBI Entrez Gene ID: 9682  8290  
ASDInformation of known allosteric effects of PDB entries
 
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