Browse entries in the PDBbind-CN Database

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Related entries of code: 6mil
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2b2vRCSB PDB    PDBbind16aa, >2B2V_3|Chain... at 93%
2b2wRCSB PDB    PDBbind20aa, >2B2W_3|Chain... at 95%
2co0RCSB PDB    PDBbind15aa, >2CO0_2|Chains... at 100%
2f6jRCSB PDB    PDBbind15aa, >2F6J_2|Chain... at 100%
2fsaRCSB PDB    PDBbind15aa, >2FSA_2|Chain... at 100%
2fuuRCSB PDB    PDBbind15aa, >2FUU_2|Chain... at 100%
2h2gRCSB PDB    PDBbind11aa, >2H2G_2|Chain... at 100%
2h9mRCSB PDB    PDBbind11aa, >2H9M_2|Chains... at 100%
2h9nRCSB PDB    PDBbind11aa, >2H9N_2|Chains... at 100%
2h9pRCSB PDB    PDBbind11aa, >2H9P_2|Chain... at 100%
2l3rRCSB PDB    PDBbind11aa, >2L3R_2|Chain... at 100%
2lbmRCSB PDB    PDBbind15aa, >2LBM_2|Chain... at 100%
2o9kRCSB PDB    PDBbind11aa, >2O9K_2|Chains... at 100%
2r0yRCSB PDB    PDBbind13aa, >2R0Y_2|Chain... at 100%
2rnwRCSB PDB    PDBbind15aa, >2RNW_2|Chain... at 100%
2rnxRCSB PDB    PDBbind13aa, >2RNX_2|Chain... at 92%
2uxnRCSB PDB    PDBbind21aa, >2UXN_3|Chain... at 95%
2v1dRCSB PDB    PDBbind21aa, >2V1D_3|Chain... at 95%
2ybpRCSB PDB    PDBbind12aa, >2YBP_2|Chains... at 91%
2ybsRCSB PDB    PDBbind12aa, >2YBS_2|Chains... at 91%
3askRCSB PDB    PDBbind13aa, >3ASK_2|Chains... at 100%
3aslRCSB PDB    PDBbind11aa, >3ASL_2|Chain... at 100%
3b95RCSB PDB    PDBbind15aa, >3B95_2|Chain... at 100%
3ij0RCSB PDB    PDBbind11aa, >3IJ0_2|Chain... at 100%
3kv4RCSB PDB    PDBbind24aa, >3KV4_2|Chain... at 95%
3me9RCSB PDB    PDBbind11aa, >3ME9_2|Chains... at 100%
3meaRCSB PDB    PDBbind11aa, >3MEA_2|Chain... at 100%
3metRCSB PDB    PDBbind11aa, >3MET_2|Chains... at 100%
3meuRCSB PDB    PDBbind14aa, >3MEU_2|Chains... at 92%
3ql9RCSB PDB    PDBbind15aa, >3QL9_2|Chain... at 100%
3qlcRCSB PDB    PDBbind15aa, >3QLC_2|Chains... at 100%
3uedRCSB PDB    PDBbind12aa, >3UED_2|Chains... at 100%
3uefRCSB PDB    PDBbind12aa, >3UEF_2|Chains... at 100%
3uigRCSB PDB    PDBbind15aa, >3UIG_2|Chains... at 100%
4a7jRCSB PDB    PDBbind16aa, >4A7J_2|Chain... at 100%
4ft2RCSB PDB    PDBbind15aa, >4FT2_2|Chain... at 100%
4ft4RCSB PDB    PDBbind32aa, >4FT4_2|Chains... at 93%
4gy5RCSB PDB    PDBbind17aa, >4GY5_2|Chains... at 100%
4qq4RCSB PDB    PDBbind16aa, >4QQ4_2|Chains... at 93%
4tmpRCSB PDB    PDBbind11aa, >4TMP_2|Chains... at 100%
4u7tRCSB PDB    PDBbind12aa, >4U7T_3|Chains... at 100%
4w5aRCSB PDB    PDBbind15aa, >4W5A_2|Chains... at 100%
4yhpRCSB PDB    PDBbind16aa, >4YHP_1|Chains... at 100%
4yhzRCSB PDB    PDBbind12aa, >4YHZ_3|Chain... at 100%
5fb0RCSB PDB    PDBbind15aa, >5FB0_2|Chains... at 100%
5fb1RCSB PDB    PDBbind15aa, >5FB1_2|Chain... at 100%
5ix1RCSB PDB    PDBbind15aa, >5IX1_2|Chains... at 100%
5svxRCSB PDB    PDBbind11aa, >5SVX_2|Chain... at 100%
5svyRCSB PDB    PDBbind11aa, >5SVY_2|Chain... at 100%
5x60RCSB PDB    PDBbind20aa, >5X60_3|Chain... at 90%
5znpRCSB PDB    PDBbind15aa, >5ZNP_2|Chains... at 100%
6bhiRCSB PDB    PDBbind16aa, >6BHI_2|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1dvaRCSB PDB    PDBbind19-mer
1idgRCSB PDB    PDBbind19-mer
1ilqRCSB PDB    PDBbind19-mer
1iwqRCSB PDB    PDBbind19-mer
1katRCSB PDB    PDBbind19-mer
1lxhRCSB PDB    PDBbind19-mer
1oqpRCSB PDB    PDBbind19-mer
2asuRCSB PDB    PDBbind19-mer
2jqkRCSB PDB    PDBbind19-mer
2k7lRCSB PDB    PDBbind19-mer
2kupRCSB PDB    PDBbind19-mer
2lloRCSB PDB    PDBbind19-mer
2llqRCSB PDB    PDBbind19-mer
2nd0RCSB PDB    PDBbind19-mer
2pl9RCSB PDB    PDBbind19-mer
2rquRCSB PDB    PDBbind19-mer
2yq6RCSB PDB    PDBbind19-mer
3bimRCSB PDB    PDBbind19-mer
3bl2RCSB PDB    PDBbind19-mer
3bu8RCSB PDB    PDBbind19-mer
3eu7RCSB PDB    PDBbind19-mer
3h52RCSB PDB    PDBbind19-mer
3pluRCSB PDB    PDBbind19-mer
3q6sRCSB PDB    PDBbind19-mer
3qnjRCSB PDB    PDBbind19-mer
3tiwRCSB PDB    PDBbind19-mer
3tzdRCSB PDB    PDBbind19-mer
3uvuRCSB PDB    PDBbind19-mer
3v2oRCSB PDB    PDBbind19-mer
3v7dRCSB PDB    PDBbind19-mer
3zhaRCSB PDB    PDBbind19-mer
4a1wRCSB PDB    PDBbind19-mer
4bpiRCSB PDB    PDBbind19-mer
4bpjRCSB PDB    PDBbind19-mer
4hpyRCSB PDB    PDBbind19-mer
4j24RCSB PDB    PDBbind19-mer
4mzjRCSB PDB    PDBbind19-mer
4mzkRCSB PDB    PDBbind19-mer
4oykRCSB PDB    PDBbind19-mer
4qxtRCSB PDB    PDBbind19-mer
4qy8RCSB PDB    PDBbind19-mer
4tknRCSB PDB    PDBbind19-mer
4xekRCSB PDB    PDBbind19-mer
4xgzRCSB PDB    PDBbind19-mer
4z8mRCSB PDB    PDBbind19-mer
5bjtRCSB PDB    PDBbind19-mer
5ekgRCSB PDB    PDBbind19-mer
5f67RCSB PDB    PDBbind19-mer
5gmiRCSB PDB    PDBbind19-mer
5gmjRCSB PDB    PDBbind19-mer
5gowRCSB PDB    PDBbind19-mer
5jeoRCSB PDB    PDBbind19-mer
5jerRCSB PDB    PDBbind19-mer
5k6sRCSB PDB    PDBbind19-mer
5mavRCSB PDB    PDBbind19-mer
5nxqRCSB PDB    PDBbind19-mer
5uw5RCSB PDB    PDBbind19-mer
5uwpRCSB PDB    PDBbind19-mer
5v2pRCSB PDB    PDBbind19-mer
5v2qRCSB PDB    PDBbind19-mer
5ybeRCSB PDB    PDBbind19-mer
6bvbRCSB PDB    PDBbind19-mer
6fkqRCSB PDB    PDBbind19-mer
6r8iRCSB PDB    PDBbind19-mer
6oieRCSB PDB    PDBbind19-mer
6h8cRCSB PDB    PDBbind19-mer
5v5oRCSB PDB    PDBbind19-mer
5j7jRCSB PDB    PDBbind19-mer
Entry Information
PDB ID6mil
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameAF9 YEATS domain Y78W
Ligand Name19-mer
EC.Number E.C.-.-.-.-
Resolution 1.93(Å)
Affinity (Kd/Ki/IC50)Kd=3.9uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Nat Commun Vol. 9: pp. 4574-4574
Ligand Properties
Formula C37H72N13O12
Molecular Weight 891.047
Exact Mass 890.542
No. of atoms 134
No. of bonds 133
Polar Surface Area 445.84
LOGP Value -4.95      (Computed with XLOGP3)
-4.28      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 12
No. of Hydrogen Bond Acceptors: 12
No. of Rotatable Bonds: 41
No. of Nitrogen and Oxygen Atoms: 25
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P42568  P68431  
Entrez Gene IDNCBI Entrez Gene ID: 4300  8350  8351  8352  8353  8354  8355  8356  8357  8358  8968  
ASDInformation of known allosteric effects of PDB entries
 
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