Browse entries in the PDBbind-CN Database

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Related entries of code: 3n5e
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1hvyRCSB PDB    PDBbind288aa, >1HVY_1|Chains... at 100%
1i00RCSB PDB    PDBbind290aa, >1I00_1|Chains... at 97%
1jujRCSB PDB    PDBbind313aa, >1JUJ_1|Chains... at 99%
2onbRCSB PDB    PDBbind313aa, >2ONB_1|Chain... at 100%
3h9kRCSB PDB    PDBbind313aa, >3H9K_1|Chains... at 99%
3hb8RCSB PDB    PDBbind313aa, >3HB8_1|Chains... at 99%
4e28RCSB PDB    PDBbind325aa, >4E28_1|Chain... at 100%
4fgtRCSB PDB    PDBbind325aa, >4FGT_1|Chain... at 99%
6pf6RCSB PDB    PDBbind290aa, >6PF6_1|Chains... at 97%
6pf5RCSB PDB    PDBbind290aa, >6PF5_1|Chains... at 97%
6pf4RCSB PDB    PDBbind290aa, >6PF4_1|Chains... at 97%
6pf3RCSB PDB    PDBbind290aa, >6PF3_1|Chains... at 97%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1fo0RCSB PDB    PDBbind8-mer
1fzjRCSB PDB    PDBbind8-mer
1fzmRCSB PDB    PDBbind8-mer
1g6rRCSB PDB    PDBbind8-mer
1g7qRCSB PDB    PDBbind8-mer
1legRCSB PDB    PDBbind8-mer
1lekRCSB PDB    PDBbind8-mer
1nlpRCSB PDB    PDBbind8-mer
1nzlRCSB PDB    PDBbind8-mer
1nzvRCSB PDB    PDBbind8-mer
1obxRCSB PDB    PDBbind8-mer
1okxRCSB PDB    PDBbind8-mer
1p2gRCSB PDB    PDBbind8-mer
1pigRCSB PDB    PDBbind8-mer
1pz5RCSB PDB    PDBbind8-mer
1qjaRCSB PDB    PDBbind8-mer
1qjbRCSB PDB    PDBbind8-mer
1qr3RCSB PDB    PDBbind8-mer
1sleRCSB PDB    PDBbind8-mer
1tpsRCSB PDB    PDBbind8-mer
2c1nRCSB PDB    PDBbind8-mer
2clvRCSB PDB    PDBbind8-mer
2er0RCSB PDB    PDBbind8-mer
2er9RCSB PDB    PDBbind8-mer
2fo4RCSB PDB    PDBbind8-mer
2h6kRCSB PDB    PDBbind8-mer
2kbsRCSB PDB    PDBbind8-mer
2qbwRCSB PDB    PDBbind8-mer
2r03RCSB PDB    PDBbind8-mer
2r9bRCSB PDB    PDBbind8-mer
2rlyRCSB PDB    PDBbind8-mer
2rt5RCSB PDB    PDBbind8-mer
2v88RCSB PDB    PDBbind8-mer
2w16RCSB PDB    PDBbind8-mer
2w3oRCSB PDB    PDBbind8-mer
2ynnRCSB PDB    PDBbind8-mer
2zpkRCSB PDB    PDBbind8-mer
3agmRCSB PDB    PDBbind8-mer
3av9RCSB PDB    PDBbind8-mer
3avaRCSB PDB    PDBbind8-mer
3avbRCSB PDB    PDBbind8-mer
3avfRCSB PDB    PDBbind8-mer
3avgRCSB PDB    PDBbind8-mer
3avhRCSB PDB    PDBbind8-mer
3aviRCSB PDB    PDBbind8-mer
3avjRCSB PDB    PDBbind8-mer
3avkRCSB PDB    PDBbind8-mer
3avlRCSB PDB    PDBbind8-mer
3avmRCSB PDB    PDBbind8-mer
3avnRCSB PDB    PDBbind8-mer
3drfRCSB PDB    PDBbind8-mer
3ds9RCSB PDB    PDBbind8-mer
3eyuRCSB PDB    PDBbind8-mer
3h85RCSB PDB    PDBbind8-mer
3i91RCSB PDB    PDBbind8-mer
3jvkRCSB PDB    PDBbind8-mer
3kzeRCSB PDB    PDBbind8-mer
3mukRCSB PDB    PDBbind8-mer
3nf3RCSB PDB    PDBbind8-mer
3omcRCSB PDB    PDBbind8-mer
3omgRCSB PDB    PDBbind8-mer
3p9lRCSB PDB    PDBbind8-mer
3p9mRCSB PDB    PDBbind8-mer
3pabRCSB PDB    PDBbind8-mer
3qg6RCSB PDB    PDBbind8-mer
3rdvRCSB PDB    PDBbind8-mer
3rwhRCSB PDB    PDBbind8-mer
3rwjRCSB PDB    PDBbind8-mer
3unnRCSB PDB    PDBbind8-mer
3uqpRCSB PDB    PDBbind8-mer
3uriRCSB PDB    PDBbind8-mer
3uyrRCSB PDB    PDBbind8-mer
3zevRCSB PDB    PDBbind8-mer
3zvyRCSB PDB    PDBbind8-mer
3zyrRCSB PDB    PDBbind8-mer
4aa1RCSB PDB    PDBbind8-mer
4aphRCSB PDB    PDBbind8-mer
4aprRCSB PDB    PDBbind8-mer
4dv9RCSB PDB    PDBbind8-mer
4e67RCSB PDB    PDBbind8-mer
4eoyRCSB PDB    PDBbind8-mer
4ep2RCSB PDB    PDBbind8-mer
4eqjRCSB PDB    PDBbind8-mer
4ezrRCSB PDB    PDBbind8-mer
4fmoRCSB PDB    PDBbind8-mer
4fn5RCSB PDB    PDBbind8-mer
4gpkRCSB PDB    PDBbind8-mer
4gvcRCSB PDB    PDBbind8-mer
4gvdRCSB PDB    PDBbind8-mer
4gvuRCSB PDB    PDBbind8-mer
4h36RCSB PDB    PDBbind8-mer
4h75RCSB PDB    PDBbind8-mer
4ii9RCSB PDB    PDBbind8-mer
4jizRCSB PDB    PDBbind8-mer
4lklRCSB PDB    PDBbind8-mer
4lkmRCSB PDB    PDBbind8-mer
4mjiRCSB PDB    PDBbind8-mer
4nxqRCSB PDB    PDBbind8-mer
4nxrRCSB PDB    PDBbind8-mer
4o2fRCSB PDB    PDBbind8-mer
4rxhRCSB PDB    PDBbind8-mer
4y7rRCSB PDB    PDBbind8-mer
4ysiRCSB PDB    PDBbind8-mer
5d7eRCSB PDB    PDBbind8-mer
5e2qRCSB PDB    PDBbind8-mer
5elqRCSB PDB    PDBbind8-mer
5em9RCSB PDB    PDBbind8-mer
5emaRCSB PDB    PDBbind8-mer
5embRCSB PDB    PDBbind8-mer
5fjxRCSB PDB    PDBbind8-mer
5fpiRCSB PDB    PDBbind8-mer
5gmvRCSB PDB    PDBbind8-mer
5hjbRCSB PDB    PDBbind8-mer
5i25RCSB PDB    PDBbind8-mer
5iokRCSB PDB    PDBbind8-mer
5iqlRCSB PDB    PDBbind8-mer
5jjmRCSB PDB    PDBbind8-mer
5mgxRCSB PDB    PDBbind8-mer
5n70RCSB PDB    PDBbind8-mer
5sviRCSB PDB    PDBbind8-mer
5sxmRCSB PDB    PDBbind8-mer
5t6pRCSB PDB    PDBbind8-mer
5t78RCSB PDB    PDBbind8-mer
5tegRCSB PDB    PDBbind8-mer
5tkjRCSB PDB    PDBbind8-mer
5tkkRCSB PDB    PDBbind8-mer
5vwiRCSB PDB    PDBbind8-mer
5vwkRCSB PDB    PDBbind8-mer
5wouRCSB PDB    PDBbind8-mer
5wttRCSB PDB    PDBbind8-mer
5xjmRCSB PDB    PDBbind8-mer
5xn3RCSB PDB    PDBbind8-mer
5ybaRCSB PDB    PDBbind8-mer
6cdmRCSB PDB    PDBbind8-mer
6cdoRCSB PDB    PDBbind8-mer
6cdpRCSB PDB    PDBbind8-mer
6e86RCSB PDB    PDBbind8-mer
6ewwRCSB PDB    PDBbind8-mer
6fauRCSB PDB    PDBbind8-mer
6favRCSB PDB    PDBbind8-mer
6fawRCSB PDB    PDBbind8-mer
6fbwRCSB PDB    PDBbind8-mer
6fbyRCSB PDB    PDBbind8-mer
6felRCSB PDB    PDBbind8-mer
6fi4RCSB PDB    PDBbind8-mer
6fi5RCSB PDB    PDBbind8-mer
6fmpRCSB PDB    PDBbind8-mer
6fx1RCSB PDB    PDBbind8-mer
6hpgRCSB PDB    PDBbind8-mer
6minRCSB PDB    PDBbind8-mer
6miqRCSB PDB    PDBbind8-mer
6q3qRCSB PDB    PDBbind8-mer
6r0xRCSB PDB    PDBbind8-mer
6qk8RCSB PDB    PDBbind8-mer
6q4qRCSB PDB    PDBbind8-mer
6mtvRCSB PDB    PDBbind8-mer
6mtuRCSB PDB    PDBbind8-mer
6ms1RCSB PDB    PDBbind8-mer
6mqeRCSB PDB    PDBbind8-mer
6mqcRCSB PDB    PDBbind8-mer
6jaxRCSB PDB    PDBbind8-mer
6hmtRCSB PDB    PDBbind8-mer
6hhpRCSB PDB    PDBbind8-mer
6dtnRCSB PDB    PDBbind8-mer
6dqlRCSB PDB    PDBbind8-mer
6do1RCSB PDB    PDBbind8-mer
Entry Information
PDB ID3n5e
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameThymidylate synthase
Ligand Name8-mer
EC.Number E.C.2.1.1.45
Resolution 2.26(Å)
Affinity (Kd/Ki/IC50)Kd=151nM
Release Year2011
Protein/NA SequenceCheck fasta file
Primary Reference (2011) Proc.Natl.Acad.Sci.USA Vol. 108: pp. E542-E549
Ligand Properties
Formula C43H73N13O13S
Molecular Weight 1012.180
Exact Mass 1011.520
No. of atoms 143
No. of bonds 143
Polar Surface Area 500.09
LOGP Value -2.56      (Computed with XLOGP3)
-1.76      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 12
No. of Hydrogen Bond Acceptors: 13
No. of Rotatable Bonds: 42
No. of Nitrogen and Oxygen Atoms: 26
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P04818  
Entrez Gene IDNCBI Entrez Gene ID: 7298  
ASDInformation of known allosteric effects of PDB entries
 
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