Browse entries in the PDBbind-CN Database

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Related entries of code: 6cdp
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1a4kRCSB PDB    PDBbind217aa, >1A4K_1|Chains... at 90%
1fl6RCSB PDB    PDBbind217aa, >1FL6_1|Chains... at 93%
4yhmRCSB PDB    PDBbind219aa, >4YHM_2|Chain... *
5tkjRCSB PDB    PDBbind219aa, >5TKJ_2|Chains... at 92%
6cdmRCSB PDB    PDBbind219aa, >6CDM_2|Chains... at 92%
6cdoRCSB PDB    PDBbind219aa, >6CDO_2|Chain... at 92%
6ddvRCSB PDB    PDBbind219aa, >6DDV_3|Chain... at 92%
6pydRCSB PDB    PDBbind219aa, >6PYD_2|Chains... at 92%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1fo0RCSB PDB    PDBbind8-mer
1fzjRCSB PDB    PDBbind8-mer
1fzmRCSB PDB    PDBbind8-mer
1g6rRCSB PDB    PDBbind8-mer
1g7qRCSB PDB    PDBbind8-mer
1legRCSB PDB    PDBbind8-mer
1lekRCSB PDB    PDBbind8-mer
1nlpRCSB PDB    PDBbind8-mer
1nzlRCSB PDB    PDBbind8-mer
1nzvRCSB PDB    PDBbind8-mer
1obxRCSB PDB    PDBbind8-mer
1okxRCSB PDB    PDBbind8-mer
1p2gRCSB PDB    PDBbind8-mer
1pigRCSB PDB    PDBbind8-mer
1pz5RCSB PDB    PDBbind8-mer
1qjaRCSB PDB    PDBbind8-mer
1qjbRCSB PDB    PDBbind8-mer
1qr3RCSB PDB    PDBbind8-mer
1sleRCSB PDB    PDBbind8-mer
1tpsRCSB PDB    PDBbind8-mer
2c1nRCSB PDB    PDBbind8-mer
2clvRCSB PDB    PDBbind8-mer
2er0RCSB PDB    PDBbind8-mer
2er9RCSB PDB    PDBbind8-mer
2fo4RCSB PDB    PDBbind8-mer
2h6kRCSB PDB    PDBbind8-mer
2kbsRCSB PDB    PDBbind8-mer
2qbwRCSB PDB    PDBbind8-mer
2r03RCSB PDB    PDBbind8-mer
2r9bRCSB PDB    PDBbind8-mer
2rlyRCSB PDB    PDBbind8-mer
2rt5RCSB PDB    PDBbind8-mer
2v88RCSB PDB    PDBbind8-mer
2w16RCSB PDB    PDBbind8-mer
2w3oRCSB PDB    PDBbind8-mer
2ynnRCSB PDB    PDBbind8-mer
2zpkRCSB PDB    PDBbind8-mer
3agmRCSB PDB    PDBbind8-mer
3av9RCSB PDB    PDBbind8-mer
3avaRCSB PDB    PDBbind8-mer
3avbRCSB PDB    PDBbind8-mer
3avfRCSB PDB    PDBbind8-mer
3avgRCSB PDB    PDBbind8-mer
3avhRCSB PDB    PDBbind8-mer
3aviRCSB PDB    PDBbind8-mer
3avjRCSB PDB    PDBbind8-mer
3avkRCSB PDB    PDBbind8-mer
3avlRCSB PDB    PDBbind8-mer
3avmRCSB PDB    PDBbind8-mer
3avnRCSB PDB    PDBbind8-mer
3drfRCSB PDB    PDBbind8-mer
3ds9RCSB PDB    PDBbind8-mer
3eyuRCSB PDB    PDBbind8-mer
3h85RCSB PDB    PDBbind8-mer
3i91RCSB PDB    PDBbind8-mer
3jvkRCSB PDB    PDBbind8-mer
3kzeRCSB PDB    PDBbind8-mer
3mukRCSB PDB    PDBbind8-mer
3n5eRCSB PDB    PDBbind8-mer
3nf3RCSB PDB    PDBbind8-mer
3omcRCSB PDB    PDBbind8-mer
3omgRCSB PDB    PDBbind8-mer
3p9lRCSB PDB    PDBbind8-mer
3p9mRCSB PDB    PDBbind8-mer
3pabRCSB PDB    PDBbind8-mer
3qg6RCSB PDB    PDBbind8-mer
3rdvRCSB PDB    PDBbind8-mer
3rwhRCSB PDB    PDBbind8-mer
3rwjRCSB PDB    PDBbind8-mer
3unnRCSB PDB    PDBbind8-mer
3uqpRCSB PDB    PDBbind8-mer
3uriRCSB PDB    PDBbind8-mer
3uyrRCSB PDB    PDBbind8-mer
3zevRCSB PDB    PDBbind8-mer
3zvyRCSB PDB    PDBbind8-mer
3zyrRCSB PDB    PDBbind8-mer
4aa1RCSB PDB    PDBbind8-mer
4aphRCSB PDB    PDBbind8-mer
4aprRCSB PDB    PDBbind8-mer
4dv9RCSB PDB    PDBbind8-mer
4e67RCSB PDB    PDBbind8-mer
4eoyRCSB PDB    PDBbind8-mer
4ep2RCSB PDB    PDBbind8-mer
4eqjRCSB PDB    PDBbind8-mer
4ezrRCSB PDB    PDBbind8-mer
4fmoRCSB PDB    PDBbind8-mer
4fn5RCSB PDB    PDBbind8-mer
4gpkRCSB PDB    PDBbind8-mer
4gvcRCSB PDB    PDBbind8-mer
4gvdRCSB PDB    PDBbind8-mer
4gvuRCSB PDB    PDBbind8-mer
4h36RCSB PDB    PDBbind8-mer
4h75RCSB PDB    PDBbind8-mer
4ii9RCSB PDB    PDBbind8-mer
4jizRCSB PDB    PDBbind8-mer
4lklRCSB PDB    PDBbind8-mer
4lkmRCSB PDB    PDBbind8-mer
4mjiRCSB PDB    PDBbind8-mer
4nxqRCSB PDB    PDBbind8-mer
4nxrRCSB PDB    PDBbind8-mer
4o2fRCSB PDB    PDBbind8-mer
4rxhRCSB PDB    PDBbind8-mer
4y7rRCSB PDB    PDBbind8-mer
4ysiRCSB PDB    PDBbind8-mer
5d7eRCSB PDB    PDBbind8-mer
5e2qRCSB PDB    PDBbind8-mer
5elqRCSB PDB    PDBbind8-mer
5em9RCSB PDB    PDBbind8-mer
5emaRCSB PDB    PDBbind8-mer
5embRCSB PDB    PDBbind8-mer
5fjxRCSB PDB    PDBbind8-mer
5fpiRCSB PDB    PDBbind8-mer
5gmvRCSB PDB    PDBbind8-mer
5hjbRCSB PDB    PDBbind8-mer
5i25RCSB PDB    PDBbind8-mer
5iokRCSB PDB    PDBbind8-mer
5iqlRCSB PDB    PDBbind8-mer
5jjmRCSB PDB    PDBbind8-mer
5mgxRCSB PDB    PDBbind8-mer
5n70RCSB PDB    PDBbind8-mer
5sviRCSB PDB    PDBbind8-mer
5sxmRCSB PDB    PDBbind8-mer
5t6pRCSB PDB    PDBbind8-mer
5t78RCSB PDB    PDBbind8-mer
5tegRCSB PDB    PDBbind8-mer
5tkjRCSB PDB    PDBbind8-mer
5tkkRCSB PDB    PDBbind8-mer
5vwiRCSB PDB    PDBbind8-mer
5vwkRCSB PDB    PDBbind8-mer
5wouRCSB PDB    PDBbind8-mer
5wttRCSB PDB    PDBbind8-mer
5xjmRCSB PDB    PDBbind8-mer
5xn3RCSB PDB    PDBbind8-mer
5ybaRCSB PDB    PDBbind8-mer
6cdmRCSB PDB    PDBbind8-mer
6cdoRCSB PDB    PDBbind8-mer
6e86RCSB PDB    PDBbind8-mer
6ewwRCSB PDB    PDBbind8-mer
6fauRCSB PDB    PDBbind8-mer
6favRCSB PDB    PDBbind8-mer
6fawRCSB PDB    PDBbind8-mer
6fbwRCSB PDB    PDBbind8-mer
6fbyRCSB PDB    PDBbind8-mer
6felRCSB PDB    PDBbind8-mer
6fi4RCSB PDB    PDBbind8-mer
6fi5RCSB PDB    PDBbind8-mer
6fmpRCSB PDB    PDBbind8-mer
6fx1RCSB PDB    PDBbind8-mer
6hpgRCSB PDB    PDBbind8-mer
6minRCSB PDB    PDBbind8-mer
6miqRCSB PDB    PDBbind8-mer
6q3qRCSB PDB    PDBbind8-mer
6r0xRCSB PDB    PDBbind8-mer
6qk8RCSB PDB    PDBbind8-mer
6q4qRCSB PDB    PDBbind8-mer
6mtvRCSB PDB    PDBbind8-mer
6mtuRCSB PDB    PDBbind8-mer
6ms1RCSB PDB    PDBbind8-mer
6mqeRCSB PDB    PDBbind8-mer
6mqcRCSB PDB    PDBbind8-mer
6jaxRCSB PDB    PDBbind8-mer
6hmtRCSB PDB    PDBbind8-mer
6hhpRCSB PDB    PDBbind8-mer
6dtnRCSB PDB    PDBbind8-mer
6dqlRCSB PDB    PDBbind8-mer
6do1RCSB PDB    PDBbind8-mer
Entry Information
PDB ID6cdp
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NamevFP20.01 Fab
Ligand Name8-mer
EC.Number E.C.-.-.-.-
Resolution 2.46(Å)
Affinity (Kd/Ki/IC50)Kd=1.64nM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Nat. Med. Vol. 24: pp. 857-867
Ligand Properties
Formula C35H57N8O9
Molecular Weight 733.875
Exact Mass 733.425
No. of atoms 109
No. of bonds 109
Polar Surface Area 268.64
LOGP Value 0.15      (Computed with XLOGP3)
0.71      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 8
No. of Hydrogen Bond Acceptors: 9
No. of Rotatable Bonds: 27
No. of Nitrogen and Oxygen Atoms: 17
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q2N0S5  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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