Browse entries in the PDBbind-CN Database

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Related entries of code: 5i25
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1zomRCSB PDB    PDBbind238aa, >1ZOM_1|Chain... at 98%
1zpbRCSB PDB    PDBbind238aa, >1ZPB_1|Chain... at 98%
1zpcRCSB PDB    PDBbind238aa, >1ZPC_1|Chain... at 98%
2fdaRCSB PDB    PDBbind238aa, >2FDA_1|Chain... at 98%
3bg8RCSB PDB    PDBbind238aa, >3BG8_1|Chain... at 99%
4cr5RCSB PDB    PDBbind238aa, >4CR5_1|Chain... at 98%
4cr9RCSB PDB    PDBbind238aa, >4CR9_1|Chain... at 98%
4craRCSB PDB    PDBbind238aa, >4CRA_1|Chain... at 98%
4crbRCSB PDB    PDBbind238aa, >4CRB_1|Chain... at 98%
4crcRCSB PDB    PDBbind238aa, >4CRC_1|Chain... at 97%
4crdRCSB PDB    PDBbind238aa, >4CRD_1|Chain... at 98%
4crfRCSB PDB    PDBbind238aa, >4CRF_1|Chain... at 98%
4na7RCSB PDB    PDBbind244aa, >4NA7_1|Chain... at 97%
4na8RCSB PDB    PDBbind244aa, >4NA8_1|Chain... at 97%
4ty7RCSB PDB    PDBbind244aa, >4TY7_1|Chain... at 96%
4wxiRCSB PDB    PDBbind244aa, >4WXI_1|Chain... at 96%
4x6mRCSB PDB    PDBbind244aa, >4X6M_1|Chain... at 96%
4x6oRCSB PDB    PDBbind244aa, >4X6O_1|Chain... at 96%
4x6pRCSB PDB    PDBbind238aa, >4X6P_1|Chains... at 99%
4y8xRCSB PDB    PDBbind244aa, >4Y8X_1|Chain... at 96%
4y8yRCSB PDB    PDBbind244aa, >4Y8Y_1|Chain... at 96%
4y8zRCSB PDB    PDBbind244aa, >4Y8Z_1|Chain... at 96%
5e2oRCSB PDB    PDBbind244aa, >5E2O_1|Chain... at 96%
5e2pRCSB PDB    PDBbind244aa, >5E2P_1|Chain... at 96%
5eokRCSB PDB    PDBbind606aa, >5EOK_1|Chain... at 100%
5exlRCSB PDB    PDBbind244aa, >5EXL_1|Chain... at 96%
5exmRCSB PDB    PDBbind244aa, >5EXM_1|Chain... at 96%
5exnRCSB PDB    PDBbind238aa, >5EXN_1|Chain... at 99%
5q0dRCSB PDB    PDBbind244aa, >5Q0D_1|Chain... at 96%
5q0eRCSB PDB    PDBbind244aa, >5Q0E_1|Chain... at 96%
5q0gRCSB PDB    PDBbind244aa, >5Q0G_1|Chain... at 96%
5q0hRCSB PDB    PDBbind244aa, >5Q0H_1|Chain... at 96%
5qckRCSB PDB    PDBbind244aa, >5QCK_1|Chain... at 96%
5qclRCSB PDB    PDBbind244aa, >5QCL_1|Chain... at 96%
5qcmRCSB PDB    PDBbind244aa, >5QCM_1|Chain... at 96%
5qcnRCSB PDB    PDBbind244aa, >5QCN_1|Chain... at 96%
5tksRCSB PDB    PDBbind244aa, >5TKS_1|Chain... at 96%
5tktRCSB PDB    PDBbind244aa, >5TKT_1|Chain... at 96%
5tkuRCSB PDB    PDBbind244aa, >5TKU_1|Chain... at 96%
5wb6RCSB PDB    PDBbind244aa, >5WB6_1|Chain... at 96%
6c0sRCSB PDB    PDBbind244aa, >6C0S_1|Chain... at 96%
5qttRCSB PDB    PDBbind244aa, >5QTT_1|Chain... at 96%
5qqpRCSB PDB    PDBbind244aa, >5QQP_1|Chain... at 96%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1fo0RCSB PDB    PDBbind8-mer
1fzjRCSB PDB    PDBbind8-mer
1fzmRCSB PDB    PDBbind8-mer
1g6rRCSB PDB    PDBbind8-mer
1g7qRCSB PDB    PDBbind8-mer
1legRCSB PDB    PDBbind8-mer
1lekRCSB PDB    PDBbind8-mer
1nlpRCSB PDB    PDBbind8-mer
1nzlRCSB PDB    PDBbind8-mer
1nzvRCSB PDB    PDBbind8-mer
1obxRCSB PDB    PDBbind8-mer
1okxRCSB PDB    PDBbind8-mer
1p2gRCSB PDB    PDBbind8-mer
1pigRCSB PDB    PDBbind8-mer
1pz5RCSB PDB    PDBbind8-mer
1qjaRCSB PDB    PDBbind8-mer
1qjbRCSB PDB    PDBbind8-mer
1qr3RCSB PDB    PDBbind8-mer
1sleRCSB PDB    PDBbind8-mer
1tpsRCSB PDB    PDBbind8-mer
2c1nRCSB PDB    PDBbind8-mer
2clvRCSB PDB    PDBbind8-mer
2er0RCSB PDB    PDBbind8-mer
2er9RCSB PDB    PDBbind8-mer
2fo4RCSB PDB    PDBbind8-mer
2h6kRCSB PDB    PDBbind8-mer
2kbsRCSB PDB    PDBbind8-mer
2qbwRCSB PDB    PDBbind8-mer
2r03RCSB PDB    PDBbind8-mer
2r9bRCSB PDB    PDBbind8-mer
2rlyRCSB PDB    PDBbind8-mer
2rt5RCSB PDB    PDBbind8-mer
2v88RCSB PDB    PDBbind8-mer
2w16RCSB PDB    PDBbind8-mer
2w3oRCSB PDB    PDBbind8-mer
2ynnRCSB PDB    PDBbind8-mer
2zpkRCSB PDB    PDBbind8-mer
3agmRCSB PDB    PDBbind8-mer
3av9RCSB PDB    PDBbind8-mer
3avaRCSB PDB    PDBbind8-mer
3avbRCSB PDB    PDBbind8-mer
3avfRCSB PDB    PDBbind8-mer
3avgRCSB PDB    PDBbind8-mer
3avhRCSB PDB    PDBbind8-mer
3aviRCSB PDB    PDBbind8-mer
3avjRCSB PDB    PDBbind8-mer
3avkRCSB PDB    PDBbind8-mer
3avlRCSB PDB    PDBbind8-mer
3avmRCSB PDB    PDBbind8-mer
3avnRCSB PDB    PDBbind8-mer
3drfRCSB PDB    PDBbind8-mer
3ds9RCSB PDB    PDBbind8-mer
3eyuRCSB PDB    PDBbind8-mer
3h85RCSB PDB    PDBbind8-mer
3i91RCSB PDB    PDBbind8-mer
3jvkRCSB PDB    PDBbind8-mer
3kzeRCSB PDB    PDBbind8-mer
3mukRCSB PDB    PDBbind8-mer
3n5eRCSB PDB    PDBbind8-mer
3nf3RCSB PDB    PDBbind8-mer
3omcRCSB PDB    PDBbind8-mer
3omgRCSB PDB    PDBbind8-mer
3p9lRCSB PDB    PDBbind8-mer
3p9mRCSB PDB    PDBbind8-mer
3pabRCSB PDB    PDBbind8-mer
3qg6RCSB PDB    PDBbind8-mer
3rdvRCSB PDB    PDBbind8-mer
3rwhRCSB PDB    PDBbind8-mer
3rwjRCSB PDB    PDBbind8-mer
3unnRCSB PDB    PDBbind8-mer
3uqpRCSB PDB    PDBbind8-mer
3uriRCSB PDB    PDBbind8-mer
3uyrRCSB PDB    PDBbind8-mer
3zevRCSB PDB    PDBbind8-mer
3zvyRCSB PDB    PDBbind8-mer
3zyrRCSB PDB    PDBbind8-mer
4aa1RCSB PDB    PDBbind8-mer
4aphRCSB PDB    PDBbind8-mer
4aprRCSB PDB    PDBbind8-mer
4dv9RCSB PDB    PDBbind8-mer
4e67RCSB PDB    PDBbind8-mer
4eoyRCSB PDB    PDBbind8-mer
4ep2RCSB PDB    PDBbind8-mer
4eqjRCSB PDB    PDBbind8-mer
4ezrRCSB PDB    PDBbind8-mer
4fmoRCSB PDB    PDBbind8-mer
4fn5RCSB PDB    PDBbind8-mer
4gpkRCSB PDB    PDBbind8-mer
4gvcRCSB PDB    PDBbind8-mer
4gvdRCSB PDB    PDBbind8-mer
4gvuRCSB PDB    PDBbind8-mer
4h36RCSB PDB    PDBbind8-mer
4h75RCSB PDB    PDBbind8-mer
4ii9RCSB PDB    PDBbind8-mer
4jizRCSB PDB    PDBbind8-mer
4lklRCSB PDB    PDBbind8-mer
4lkmRCSB PDB    PDBbind8-mer
4mjiRCSB PDB    PDBbind8-mer
4nxqRCSB PDB    PDBbind8-mer
4nxrRCSB PDB    PDBbind8-mer
4o2fRCSB PDB    PDBbind8-mer
4rxhRCSB PDB    PDBbind8-mer
4y7rRCSB PDB    PDBbind8-mer
4ysiRCSB PDB    PDBbind8-mer
5d7eRCSB PDB    PDBbind8-mer
5e2qRCSB PDB    PDBbind8-mer
5elqRCSB PDB    PDBbind8-mer
5em9RCSB PDB    PDBbind8-mer
5emaRCSB PDB    PDBbind8-mer
5embRCSB PDB    PDBbind8-mer
5fjxRCSB PDB    PDBbind8-mer
5fpiRCSB PDB    PDBbind8-mer
5gmvRCSB PDB    PDBbind8-mer
5hjbRCSB PDB    PDBbind8-mer
5iokRCSB PDB    PDBbind8-mer
5iqlRCSB PDB    PDBbind8-mer
5jjmRCSB PDB    PDBbind8-mer
5mgxRCSB PDB    PDBbind8-mer
5n70RCSB PDB    PDBbind8-mer
5sviRCSB PDB    PDBbind8-mer
5sxmRCSB PDB    PDBbind8-mer
5t6pRCSB PDB    PDBbind8-mer
5t78RCSB PDB    PDBbind8-mer
5tegRCSB PDB    PDBbind8-mer
5tkjRCSB PDB    PDBbind8-mer
5tkkRCSB PDB    PDBbind8-mer
5vwiRCSB PDB    PDBbind8-mer
5vwkRCSB PDB    PDBbind8-mer
5wouRCSB PDB    PDBbind8-mer
5wttRCSB PDB    PDBbind8-mer
5xjmRCSB PDB    PDBbind8-mer
5xn3RCSB PDB    PDBbind8-mer
5ybaRCSB PDB    PDBbind8-mer
6cdmRCSB PDB    PDBbind8-mer
6cdoRCSB PDB    PDBbind8-mer
6cdpRCSB PDB    PDBbind8-mer
6e86RCSB PDB    PDBbind8-mer
6ewwRCSB PDB    PDBbind8-mer
6fauRCSB PDB    PDBbind8-mer
6favRCSB PDB    PDBbind8-mer
6fawRCSB PDB    PDBbind8-mer
6fbwRCSB PDB    PDBbind8-mer
6fbyRCSB PDB    PDBbind8-mer
6felRCSB PDB    PDBbind8-mer
6fi4RCSB PDB    PDBbind8-mer
6fi5RCSB PDB    PDBbind8-mer
6fmpRCSB PDB    PDBbind8-mer
6fx1RCSB PDB    PDBbind8-mer
6hpgRCSB PDB    PDBbind8-mer
6minRCSB PDB    PDBbind8-mer
6miqRCSB PDB    PDBbind8-mer
6q3qRCSB PDB    PDBbind8-mer
6r0xRCSB PDB    PDBbind8-mer
6qk8RCSB PDB    PDBbind8-mer
6q4qRCSB PDB    PDBbind8-mer
6mtvRCSB PDB    PDBbind8-mer
6mtuRCSB PDB    PDBbind8-mer
6ms1RCSB PDB    PDBbind8-mer
6mqeRCSB PDB    PDBbind8-mer
6mqcRCSB PDB    PDBbind8-mer
6jaxRCSB PDB    PDBbind8-mer
6hmtRCSB PDB    PDBbind8-mer
6hhpRCSB PDB    PDBbind8-mer
6dtnRCSB PDB    PDBbind8-mer
6dqlRCSB PDB    PDBbind8-mer
6do1RCSB PDB    PDBbind8-mer
Entry Information
PDB ID5i25
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameHuman Plasma Coagulation Factor XI
Ligand Name8-mer
EC.Number E.C.3.4.21.27
Resolution 2.85(Å)
Affinity (Kd/Ki/IC50)Kd=324uM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Blood Vol. 127: pp. 2915-2923
Ligand Properties
Formula C40H58N9O15
Molecular Weight 904.940
Exact Mass 904.405
No. of atoms 122
No. of bonds 124
Polar Surface Area 388.98
LOGP Value -1.79      (Computed with XLOGP3)
-2.28      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 8
No. of Hydrogen Bond Acceptors: 15
No. of Rotatable Bonds: 29
No. of Nitrogen and Oxygen Atoms: 24
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P01042  P03951  
Entrez Gene IDNCBI Entrez Gene ID: 3827  2160  
ASDInformation of known allosteric effects of PDB entries
 
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