Browse entries in the PDBbind-CN Database

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Related entries of code: 5dy5
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5marRCSB PDB    PDBbind303aa, >5MAR_1|Chains... at 99%
5matRCSB PDB    PDBbind303aa, >5MAT_1|Chains... at 99%
5y0zRCSB PDB    PDBbind293aa, >5Y0Z_1|Chains... at 100%
5y5nRCSB PDB    PDBbind336aa, >5Y5N_1|Chain... at 96%
5yqlRCSB PDB    PDBbind306aa, >5YQL_1|Chain... at 98%
5yqnRCSB PDB    PDBbind306aa, >5YQN_1|Chain... at 98%
5yqoRCSB PDB    PDBbind306aa, >5YQO_1|Chain... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5dy5
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namehuman Sirtuin 2
Ligand Name5GR
EC.Number E.C.3.5.1
Resolution 1.95(Å)
Affinity (Kd/Ki/IC50)IC50=0.163uM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Angew.Chem.Int.Ed.Engl. Vol. 55: pp. 2252-2256
Ligand Properties
Formula C28H27N7O2S2
Molecular Weight 557.690
Exact Mass 557.167
No. of atoms 66
No. of bonds 70
Polar Surface Area 161.25
LOGP Value 4.94      (Computed with XLOGP3)
5.16      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 12
No. of Nitrogen and Oxygen Atoms: 9
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q8IXJ6  
Entrez Gene IDNCBI Entrez Gene ID: 22933  
ASDInformation of known allosteric effects of PDB entries

 
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